Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11812896 chr10:134425271 G/A 0.000334 171 24.7 26.62 2.23 KM Plot
PCPG rs118129718 chr10:69581393 C/T 0 171 25.87 16.97 2.28 KM Plot
PCPG rs118130792 chr10:69739356 G/C 0 177 25.87 18.2 2.28 KM Plot
PCPG rs118130855 chr12:56677979 T/A 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs118134111 chr7:105161229 A/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs11814062 chr10:134439823 C/T 0.00036 170 24.62 26.62 2.23 KM Plot
PCPG rs11830312 chr12:5112406 C/G 2.96E-5 177 25.47 24.1 14.4 KM Plot
PCPG rs11835979 chr12:26886812 C/T 8.74E-5 178 24.5 27.87 5.97 KM Plot
PCPG rs11842958 chr13:28233801 A/G 5.3E-6 178 25.28 26.22 11.78 KM Plot
PCPG rs11844548 chr14:74319455 G/A 9.6E-6 178 25.47 28.3 10.3 KM Plot
PCPG rs11857970 chr15:39739456 A/T 0.000419 178 24.85 26.47 26.33 KM Plot
PCPG rs11859947 chr16:1767072 A/C 1.76E-11 173 25.67 18.75 4.52 KM Plot
PCPG rs11862081 chr16:89588488 A/G 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs11863003 chr16:1746794 A/G 0.000436 178 25.47 19.57 6.1 KM Plot
PCPG rs11864726 chr16:89587030 C/T 0.000192 177 26.78 25.4 19.53 KM Plot